Gillespie.jl: Stochastic Simulation Algorithm in Julia
نویسندگان
چکیده
منابع مشابه
Parareal Algorithm Implementation and Simulation in Julia
We present a full implementation of the parareal algorithm—an integration technique to solve di erential equations in parallel— in the Julia programming language for a fully general, rst-order, initial-value problem. Our implementation accepts both coarse and ne integrators as functional arguments. We use Euler’s method and another Runge-Kutta integration technique as the integrators in our exp...
متن کاملParallel stochastic reaction-diffusion simulation using Gillespie stochastic simulation algorithm
Spatial stochastic simulation is a valuable method for studying processes of reaction and diffusion in biological systems. This technique requires significant computational efforts, but the availability of high-performance computing made it possible to develop coherent computational models of cells [1]. Several approaches were introduced in order to utilize parallel execution to speed up simula...
متن کاملAccelerating the Stochastic Simulation Algorithm
In order for scientists to learn more about molecular biology, it is imperative that they have the ability to construct accurate models that predict the reactions of species of molecules. Generating these models using deterministic approaches is not feasible as these models may violate some of the assumptions underlying classical differential equations models (e.g., small populations with discr...
متن کاملA retrodictive stochastic simulation algorithm
Article history: Received 7 August 2009 Received in revised form 4 December 2009 Accepted 20 January 2010 Available online 28 January 2010
متن کاملA new stochastic 3D seismic inversion using direct sequential simulation and co-simulation in a genetic algorithm framework
Stochastic seismic inversion is a family of inversion algorithms in which the inverse solution was carried out using geostatistical simulation. In this work, a new 3D stochastic seismic inversion was developed in the MATLAB programming software. The proposed inversion algorithm is an iterative procedure that uses the principle of cross-over genetic algorithms as the global optimization techniqu...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: The Journal of Open Source Software
سال: 2016
ISSN: 2475-9066
DOI: 10.21105/joss.00042